Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015920044.1_cds_XP_016469236.1_61795
CDS Infomation

[gene=LOC107791654] [db_xref=GeneID:107791654] [protein=probable pectate lyase 5] [protein_id=XP_016469236.1] [location=join(106006..106136,106631..107339,107928..108119,108346..108551,110269..110515)] [gbkey=CDS]
Sequence

ATGCTTTCTAGTTGCATTCTTTTTTTCTTCTTCTTCTTCTTAACCTTATCTCCTCTTATT
ATAGCTACCTTTAATCTTACTCTTCCTTATCAACACCCCTTTCCTGAAGTTGTTGTTCAA
GAAGTAAAGAGGAGGGTCAATGAATCCGTTGCAAGAAGACAAATACTCGACACTACAGTA
ACAAATTTCCAATGTTTTACGGGCAATCCAATAGACGATTGCTGGAAGTGCGACCCAAAC
TGGGCCAACAACCGCCAGCATCTCGCCGACTGTGCCATTGGGTTCGGTCACGGTGCAGTC
GGAGGAAAAGGAGGCCGGTATTACCTAGTCACCGATCCCTCCGACTTAGACACCGTGAAC
CCAACCCCAGGAACTCTCCGGCACGCGGTGATCCAGGACGAACCTCTGTGGATCACCTTT
GCCGGAGACATGATCATAACACTAAAACATGAACTCATGATTAACAATTACAAAACCATC
GATGGCCGCGGCGCCAACGTGCATGTTACAGGGGGTGGATGTATAACTTTACAATATGTT
ACGAATGTGATTATACATAATATACATATATATAATTGTGTTCCATCTGGAAATAGTAAT
ATAAGGCAAAGTACAACTGAGGTTGGATGGAGAGGCATGTCAGATGGTGATGGAATTTCT
ATATATAGTTCCAGGAATATTTGGATTGATCATTGTGCTTTGTCTCGTTGTACCGATGGC
TTAATTGATGCTATTATGGGATCTACTGCTATTACTATATCTAATAGTTATTTCACTCAC
CATGATAAAGTTATGCTTTTGGGACATGATGATCGTTACTTGCCTGATTTCGGCATGCAG
GTGACAATAGCTTTTAATCATTTTGGACAAGGGCTAGTACAGAGAATGCCAAGGTGTAGA
AGAGGGTATATACATGTAGTCAACAATGATTTTACAGAATGGCAAATGTATGCAATTGGT
GGTAGCGCTAATCCCACCATCAACAGTCAGGGCAACCGTTTTACTGCACCTGAGGATCCA
AATGCCAAGGAGGTGACGAAGCGAGTTGACACAAACGAGCAAGATTGGAGTCAGTGGAAC
TGGAGGACGGAAGGGGATGAAATGGTAAATGGAGCATACTTTGTTCCTTCAGGTGATGGA
CTTAGTAACCAATATGCATTGGCATCAAGTATGGAGCCTAAATCTGCTTTTCTCATTGAT
CAACTCACTATGAATGCTGGTATCCTTGGCGTCCCCAGGGATACCAGTGTGGCCATGTCA
TATGGTGGGAGAACCAGAACCACCGTCGGAACCAAAAGGGGTGGCGGAGCTAGGTCTAAT
GACGGTGATGATGACTTCTTAGAAAAGGTATTTGGCAGCGTTGCATCGGCAGGATCATCA
TCATCATCACCTTCAACCACCATCATCTTGTTGTCTCTTCTAATTTTGTATGTTACCACC
AACAATGGTGGCCTATTGACATTGCCATTAATACTGTTACTATAG

Peptide Sequence

PEP ID

XP_016469236.1
PEP Infomation

PREDICTED: probable pectate lyase 5 [Nicotiana tabacum]
Sequence

MLSSCILFFFFFFLTLSPLIIATFNLTLPYQHPFPEVVVQEVKRRVNESVARRQILDTTV
TNFQCFTGNPIDDCWKCDPNWANNRQHLADCAIGFGHGAVGGKGGRYYLVTDPSDLDTVN
PTPGTLRHAVIQDEPLWITFAGDMIITLKHELMINNYKTIDGRGANVHVTGGGCITLQYV
TNVIIHNIHIYNCVPSGNSNIRQSTTEVGWRGMSDGDGISIYSSRNIWIDHCALSRCTDG
LIDAIMGSTAITISNSYFTHHDKVMLLGHDDRYLPDFGMQVTIAFNHFGQGLVQRMPRCR
RGYIHVVNNDFTEWQMYAIGGSANPTINSQGNRFTAPEDPNAKEVTKRVDTNEQDWSQWN
WRTEGDEMVNGAYFVPSGDGLSNQYALASSMEPKSAFLIDQLTMNAGILGVPRDTSVAMS
YGGRTRTTVGTKRGGGARSNDGDDDFLEKVFGSVASAGSSSSSPSTTIILLSLLILYVTT
NNGGLLTLPLILLL

Transcript Sequence

Gene sequence data has not been registered.